R Package for Analyzing John Snow's 1854 Cholera Map
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Updated
Jun 13, 2024 - R
R Package for Analyzing John Snow's 1854 Cholera Map
Python package for statistical inference and forecast of epi models using multiple signals
Regression Models for Epidemiology
R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility
Portal de dados do Projeto Alerta Dengue
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
[Under active development] - A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
Detect iSNV and construct whole viral genomes from metagenomic samples
R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
CRAN Task View: Epidemiology
R package for handling linelist data
An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
R Package for Simultaneous Multi-Bias Analysis
R package to clean and standardize epidemiological data
An R package for importing epi data into R.
A repository for the Quarto version of R4Epi.
Compartmental Epidemic Models in Python
R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters
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