Personal Website with Blogposts, Achievements and Ideas
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Updated
Jun 2, 2024 - HTML
Personal Website with Blogposts, Achievements and Ideas
Genome identification tool for Double-strand Break Repair
Official code repository for GATK versions 4 and up
Library-free horizontal transfer detection, with a focus on transposable element invasions
Evaluating genome assemblies
Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermitteln.
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
A Nextflow workflow to generate lift over files for any pair of genomes
sra cloner and interacts with the nucleotide sra and allows for multiple sra fetcher
Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
Small python tool for in-scale drawings viruses genome scemes
🌳 Human ancestry inference from genomic data
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A visualization grammar and GPU-accelerated toolkit for genomic data
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